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The cell cycle: growth, copying, and one division that changes nothing

Mitosis gets the attention and the mnemonic, but in a cell cycling in about a day it occupies roughly a tenth of the time. The other nine tenths are where the DNA is copied and the copy is checked, and that is where the answers to most exam questions on this topic actually live.

Before this DNA structure and replication · Eukaryotic cell ultrastructure

Before you start

Cells spend most of their lives dividing, and interphase is the resting phase between divisions. Older textbooks really did call it a resting phase, and the name has outlived the idea. Interphase is the busiest part of the cycle: the entire genome is copied during it, base by base, and checked afterwards. Mitosis is the short, tidy part at the end.

What you should be able to do

Three phases before anything divides

A cell that is going to divide works through the same sequence every time. In G1 it grows and makes more of the organelles it will have to share out. In S phase it replicates its DNA, semi-conservatively, so that every chromosome ends up as two identical sister chromatids held together at a centromere. In G2 it keeps growing and checks the copy for errors. Only then does mitosis begin.

Drawn to scale in time, which is the point. If a question asks which phase a randomly chosen cell is most likely to be in, the answer is interphase, and the ring shows why.

That ring is drawn for a cell cycling in about 24 hours, and the proportions are a typical case rather than a constant of nature. G1 stretches and shrinks: a root-tip meristem cell runs the whole cycle in a few hours, and mitosis then takes a larger share of a smaller total. Keep the ordering, which never changes, and treat the exact tenth as a figure attached to a 24-hour cycle.

Some cells leave the cycle. A neurone or a mature muscle fibre stops at the end of G1 and enters G0, which is less a phase than the exit from one: it never replicates its DNA again. Most of your cells are in G0 now.

The chromosome count does not change during S phase, which trips people up. A human cell in G1 has 46 chromosomes; after S phase it still has 46 chromosomes, but each one is now two chromatids, so there is twice as much DNA. Count centromeres, not strands, and the arithmetic behaves.

Chromatid
One of the two identical copies of a chromosome, joined to its sister at the centromere after DNA replication.
Homologous pair
Two chromosomes of the same size carrying the same genes at the same loci, one inherited from each parent — not the same thing as a pair of chromatids.
Spindle
The framework of protein microtubules built across the cell before the chromosomes are moved, running from pole to pole and attaching to every centromere; shortening the fibres is what separates the chromatids.
Mitotic index
The proportion of cells in a sample that are visibly in mitosis.

What each checkpoint actually asks

Between the phases sit checkpoints, worth knowing by what they check rather than by name. Each is a point the cycle will not pass until one question is answered yes, and the asking is done by the cell's own proteins — which is why a mutation in one of them matters so much.

CheckpointWhere it sitsThe question it asks
G1 checkpointEnd of G1, before S phaseIs the cell big enough, are nutrients there, is the DNA undamaged?
G2 checkpointEnd of G2, before mitosisDid replication finish, and finish without errors left in it?
Spindle checkpointMetaphase, before anaphaseIs every centromere attached to fibres from both poles?

The G1 checkpoint is the point of no return. A cell that passes it is committed to copying its entire genome whether conditions stay favourable or not, so cell size, nutrients, signals from neighbours and DNA damage all get their say here. A cell that fails drops back into G0.

The G2 checkpoint is a proofreading stop. S phase copies about three thousand million base pairs in a human cell and does not do it flawlessly, so this checkpoint refuses a cell with unrepaired breaks. Damage that gets past is handed to both daughters.

The spindle checkpoint sits inside mitosis rather than between two phases, and it is why anaphase is so abrupt: one chromosome not yet attached to both poles holds the whole cell at metaphase, and when the last attachment is made every centromere divides at once.

Keep two words apart. A checkpoint delays the cycle, and most cells held at one repair the fault and go on. Apoptosis ends the cell, and is the fallback when repair fails — the tissue between your fingers in the womb was removed by it.

Four stages, and what defines each one

Mitosis is conventionally split into four stages. The split is a convenience — the process runs continuously — but the stages are defined by things you can actually see down a microscope, which is why they are examinable and why you can be handed a photograph and asked to identify one.

Watch the centromeres. They are intact and lined up in metaphase, and the moment they divide is the moment anaphase begins — that single event is the cleanest way to tell the two apart in a photograph.
StageWhat defines itWhat to look for
ProphaseChromosomes condense; the spindle forms; nuclear envelope breaks downVisible chromosomes, no clear nuclear edge
MetaphaseChromosomes line up on the equator, each centromere attached to spindle fibres from both polesA single line of chromosomes across the middle
AnaphaseCentromeres divide; chromatids pulled to polesTwo groups moving apart, chromatids V-shaped as they are dragged
TelophaseNuclear envelopes re-form; chromosomes decondenseTwo clusters, each acquiring an envelope

The spindle earns its own paragraph, because two of the four stages are defined by what it is doing. It is a framework of protein microtubules, assembled during prophase and running from one pole of the cell to the other. In an animal cell the poles are organised by a pair of centrioles; a plant cell builds the same spindle without them, which is a favourite one-mark question. Fibres attach to every centromere from both sides, and anaphase is those fibres shortening.

Cytokinesis follows, and it is not part of mitosis proper: mitosis divides the nucleus, cytokinesis divides the cytoplasm. In animal cells a ring of protein filaments under the membrane contracts and pinches it inwards. In plant cells it cannot, because of the cell wall, so vesicles line up along the middle, fuse into a cell plate, and a new wall is built outwards from it. Organelles are shared out roughly rather than counted, which is one of the few imprecise things about mitosis.

Counting cells: the mitotic index

The mitotic index is the one calculation this topic asks for, and it comes out of a practical you can run with an onion and a bottle of stain. The tip of a root is a meristem: a few millimetres in which every cell is still dividing. Cut more than 5 mm back and you are into cells that have left the cycle and begun elongating.

The preparation decides whether the count is worth anything. The tip is warmed in dilute hydrochloric acid, which breaks down the middle lamella holding the cells together, then stained — toluidine blue or acetic orcein, both chosen because they bind to DNA — and squashed under a coverslip to a single layer. Two overlapping layers cannot be scored, because a chromosome in one plane of focus looks much like a chromosome in another.

Then the counting, which is where the marks are. Score every cell in the field rather than the interesting ones, because a sample chosen by eye is a sample chosen for cells in mitosis. Count several fields and add them, and state the total: an index without its denominator is an opinion.

Reading a root tip

A student examines a stained root tip squash and counts 240 cells, of which 36 are visibly in mitosis. Calculate the mitotic index, and suggest what a much lower value in a second sample would indicate.

The mitotic index is the proportion in mitosis: 36 ÷ 240 = 0.15, or 15%. Give it as a proportion or a percentage, but say which.

A much lower value means fewer cells are dividing at the moment of fixing. In a root tip that would suggest the sample came from further back from the tip, away from the meristem where division happens.

One caution about what the number means. Mitosis is a small fraction of any cycle, so even tissue dividing as fast as it can shows most of its cells in interphase, and 0.15 is a dividing tissue rather than a sluggish one. The tenth on the ring belongs to a cycle of about a day; a meristem cell finishes its cycle in a few hours, so published indices for onion root tips run from about 0.2 to 0.4, and a squash taking in tissue behind the meristem lands where this one did.

One inference the index licenses, and one it does not. A fixed slide is a snapshot of a population, so the fraction caught in a stage is the fraction of the cycle that stage occupies: cycle 20 hours, index 0.15, mitosis about 3 hours. What it cannot tell you alone is how fast the tissue divides, since equal indices mean different rates when the cycles differ in length.

Division that is not mitosis

Mitosis is a eukaryote's answer to a eukaryote's problem: a nuclear envelope to take down and rebuild, and several long linear chromosomes to sort without tangling. A prokaryote has neither, and divides by binary fission. The circular DNA molecule is replicated and the two copies attach to the cell surface membrane at separate points; plasmids are replicated too, though not to a fixed number. The cell grows, carrying the attachment points apart, and a new membrane and wall are laid down across the middle.

Three differences from mitosis are worth having ready. No spindle. No nuclear envelope to break down or re-form. And no chromosomes in the sense used above, so an answer saying 'the chromosomes line up' has imported the wrong process. Binary fission is also fast: Escherichia coli divides in twenty minutes in good conditions, against the day a human cell takes.

The other division a specification asks about is meiosis, a different tool for a different job, with a lesson of its own later in the course. The boundary is what to carry from here: everything above is the division that changes nothing.

FeatureMitosisBinary fissionMeiosis
Cells producedTwoTwoFour
Chromosome numberUnchangedUnchangedHalved
Daughters identical?Yes, to each other and the parentYes, apart from plasmid numberNo, every one different
Spindle used?YesNoYes, in both divisions
What it is forGrowth, repair, asexual reproductionReproduction of the whole organismMaking gametes

When the controls fail

Every daughter cell from mitosis is genetically identical to the parent, which is what makes mitosis the right tool for growth, for repair, and for asexual reproduction. It is also what makes a fault in the process serious: an error is copied faithfully into everything descended from that cell.

Mutations in the genes controlling the checkpoints can leave a cell dividing when it should have stopped. Two categories matter. Proto-oncogenes normally stimulate division, and a mutation can leave one permanently switched on. Tumour suppressor genes normally halt the cycle at a checkpoint, and a mutation can switch one off. Either way the cycle loses a brake, division continues unchecked, and a mass of cells accumulates: a tumour.

That also explains why many chemotherapy drugs work the way they do. Some prevent DNA replication in S phase, some disrupt spindle formation so metaphase cannot complete. Neither targets cancer cells specifically — they target dividing cells — which is why hair follicles and the gut lining, both dividing rapidly, suffer the familiar side effects.

TRY IT — Explaining a drug's side effects

A drug used in chemotherapy binds to tubulin and prevents spindle fibres forming. Explain how this stops a tumour growing, and why the patient loses their hair.

Check your answer

Without spindle fibres, chromosomes cannot be attached and lined up on the equator, so the cell cannot pass from metaphase into anaphase. Division stops, and the tumour stops growing.

The drug cannot distinguish a tumour cell from any other dividing cell. Cells in hair follicles divide rapidly, so they are blocked as well and hair is not replaced as it is shed.

The mark most often missed here is naming the stage. 'It stops mitosis' is vague; 'chromosomes cannot align at metaphase, so anaphase never begins' is the answer.

In the exam

Check yourself

A cell from a mouse has 40 chromosomes. State the number of chromosomes and the number of chromatids present in that cell at the end of G2, and in each daughter cell immediately after mitosis. Explain your answers.

Answer

At the end of G2 the cell has 40 chromosomes and 80 chromatids. S phase has replicated every chromosome, so each one is now two sister chromatids joined at a centromere, but the centromere count — and so the chromosome count — has not changed.

Immediately after mitosis each daughter cell has 40 chromosomes and 40 chromatids, or equivalently 40 single-chromatid chromosomes. Anaphase separated the sisters, and once separated each is a chromosome in its own right.

The wording is what makes this hard rather than the biology. A chromatid becomes a chromosome the moment its centromere divides, so the same physical strand has two names depending on when you ask.

Questions

Written to the command words the boards use. Try them on paper before opening a scheme: the marks go to points made, not to length.

Question 14 marks

Describe what happens to the chromosomes during each of the four stages of mitosis, in the order the stages occur.

Mark scheme
  1. B1 prophase: chromosomes condense and become visible, each already two sister chromatids
  2. B1 metaphase: chromosomes line up along the equator, attached to spindle fibres at their centromeres
  3. B1 anaphase: centromeres divide and the sister chromatids are pulled to opposite poles
  4. B1 telophase: chromosomes reach the poles, decondense, and a nuclear envelope re-forms around each group

Question 24 marks

Explain how a mutation in a tumour suppressor gene can lead to the formation of a tumour.

Mark scheme
  1. B1 tumour suppressor genes normally halt the cell cycle at a checkpoint
  2. B1 a mutation can switch the gene off, so the protein it codes for is not produced or does not function
  3. B1 the checkpoint no longer stops cells with damaged DNA or incomplete replication from dividing
  4. A1 division continues unchecked and a mass of cells accumulates, which is a tumour

Question 33 marks

A cell from a mouse has 40 chromosomes. Explain why the cell still has 40 chromosomes at the end of G2, even though the quantity of DNA in it has doubled.

Mark scheme
  1. B1 DNA is replicated during S phase, so each chromosome is copied
  2. B1 the two copies stay joined at a single centromere as sister chromatids
  3. A1 chromosome number is counted by centromeres, so it is unchanged at 40 while the DNA quantity is doubled

Question 43 marks

A student counts 240 cells in a stained root tip squash and finds 36 of them are visibly in mitosis. Calculate the mitotic index, and give your answer as a proportion.

Mark scheme
  1. M1 mitotic index = number of cells in mitosis divided by the total number of cells counted
  2. M1 36 divided by 240
  3. A1 0.15, or equivalently 15 per cent, stated as a proportion of the 240 cells counted

Question 53 marks

A drug being tested as a cancer treatment binds to tubulin and prevents spindle fibres from forming. Suggest why this stops a tumour growing, and why the patient loses their hair.

Mark scheme
  1. B1 without spindle fibres the chromosomes cannot be attached and aligned at the equator, so the cell cannot pass from metaphase into anaphase
  2. B1 division stops, so the tumour cannot grow by producing more cells
  3. B1 the drug cannot distinguish tumour cells from any other dividing cells, and hair follicle cells divide rapidly, so hair is not replaced as it is shed

Worth remembering

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